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Structural biology

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Structural biology is the study of the shapes of living matter. This matter is formed and maintained by living cells. It includes biological molecules like proteins, DNA, RNA, and membranes. These molecules are essential because they carry out most cell functions. To work, they must coil into very specific three-dimensional shapes. This complex architecture is known as the tertiary structure. The shape depends on the molecule's basic composition, called the primary structure.

Protein structure examples
Protein structure examples

Biomolecules are too small to see with standard light microscopes. Instead, scientists use methods that measure many identical molecules at once. One major method is X-ray crystallography. This technique uses X-rays to find the atomic detail of biological molecules. Another method is nuclear magnetic resonance, or NMR spectroscopy. NMR provides information about both the structure and the movement of proteins. A third method is cryo-electron microscopy, or cryo-EM. This technique uses coherent electron sources and special software to create 3D images. It can reach angstrom resolution, which is a very tiny scale of measurement.

Hemoglobin t-r state ani
Hemoglobin t-r state ani

Structural biology includes many different specialized techniques. Researchers use mass spectrometry to study these molecules. They also use neutron diffraction and proteolysis. Other tools include electron paramagnetic resonance (EPR) and electron crystallography. Some scientists use multiangle light scattering or small angle scattering. More advanced tools include ultrafast laser spectroscopy and circular dichroism. Scientists often study the "native states" of these molecules. This means they look at the molecules in their natural, functional forms. They also study how molecules change as they fold or unfold.

History shows how our view of the tiny world has changed. In 1912, Max Von Laue used X-rays on crystallized copper sulfate. This created a diffraction pattern and led to X-ray crystallography. In 1951, Rosalind Franklin and Maurice Wilkins captured the first DNA image. Using X-ray diffraction, Francis Crick and James Watson modeled the DNA double helix in 1953. They shared the Nobel Prize in 1962 with Wilkins. Theodore Svedberg crystallized the first proteins, such as pepsin. He also won a Nobel Prize in 1962. In 1958, John Kendrew published the first tertiary protein structure of myoglobin.

Protein structure examples
Protein structure examples

Technological advances have expanded what we can discover. In the late 1930s and 1940s, Isidor Rabi, Felix Bloch, and Edward Mills Purcell developed NMR. In 1990, Richard Henderson used cryo-EM to image bacteriorhodopsin at high resolution. Today, we use X-ray free electron lasers to watch molecules in motion. We also use computational methods like molecular dynamics (MD) simulations. These simulations help us study how proteins move and change shape. In 1975, the first MD simulation of protein folding was published in Nature. Recently, a machine learning method called AlphaFold has greatly improved protein structure prediction.

Understanding these structures is vital for medical science. Structural biology helps us understand the components of human diseases. For example, cryo-EM and solid-state NMR study amyloid fibrils. These fibrils are linked to Alzheimer's, Parkinson's, and type II diabetes. Scientists have also used cryo-EM to model tau filaments in Alzheimer's patients. This work may help create better treatments. Structural biology also explains how pathogens interact with hosts. For instance, it shows how the HIV envelope helps the virus hide from the immune system.

Structural Biology and Drug Discovery
Structural Biology and Drug Discovery

This field is a major part of the drug discovery process. Scientists use genomics to find specific targets in the body. Then, they use structural biology to study those targets. They use tools like ligand-NMR and mass spectrometry to develop drugs. The goal is to create drugs that fit the target perfectly. Researchers have used these methods on the Met protein to study cancer. They have also used them to find targets for treating AIDS. Scientists are even using structure-driven discovery to create new antimicrobials for mycobacterial infections.

Structural Biology and Drug Discovery
Structural Biology and Drug Discovery
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Structural Biology and Drug Discovery.png
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