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Chloroflexota

life science Maturity 11-13 Next article →

The Chloroflexota are a diverse phylum of bacteria with many different ways of living. These microscopic organisms occupy many different environments on Earth. Some members are aerobic thermophiles, meaning they require oxygen and thrive in high temperatures. Other members are anoxygenic phototrophs, often called green non-sulfur bacteria, because they use light for photosynthesis. There are also anaerobic halorespirers within this group. These bacteria use halogenated organics, such as toxic chlorinated ethenes or polychlorinated biphenyls, as electron acceptors to survive.

Scientists study the structure of these bacteria to understand how they are classified. Most members of Chloroflexota are monoderms, which means they possess only one cell membrane and no outer membrane. Interestingly, despite having only one membrane, they mostly stain gram-negative during laboratory tests. This is a unique trait among bacteria. Many other well-studied phyla are diderms, which means they have two membranes and also stain gram-negative. Other known monoderms include the phyla Firmicutes and Actinomycetota, but these usually stain gram-positive instead.

The history of this group involves major shifts in how we understand life. In 1987, Carl Woese helped lead a molecular phylogeny revolution. He used 16S ribosomal RNA sequences to divide Eubacteria into 11 different divisions. He grouped the genera Chloroflexus, Herpetosiphon, and Thermomicrobium into a group called "green non-sulfur bacteria and relatives." This group was temporarily named Chloroflexi in the Bergey's Manual of Systematic Bacteriology. The official taxon name Chloroflexota was eventually created in the 2001 edition of that same manual. The name is the Latin plural of Chloroflexus, which is the type genus of the phylum.

Since 2001, the phylum has expanded significantly as new species are discovered. This growth has led to the creation of many new classes. For instance, Hugenholtz and Stackebrandt used "Dehalococcoidetes" as a placeholder name in 2004. This name followed the description of the species Dehalococcoides ethenogenes in 1997. In 2009, Moe and colleagues fully described the species Dehalogenimonas lykanthroporepellens. However, because this species shares only 90% 16S ribosomal RNA identity with others, scientists cannot yet officially place it into specific families or orders.

Modern scientists use complex tools to map the relationships within Chloroflexota. They use phylogenetic analysis to build trees based on large datasets of proteins. Recent studies have found very weak support for grouping all current classes into one single phylum. The six classes do not always form a well-supported clade in these protein-based trees. Furthermore, researchers have not identified any conserved signature indels, which are specific genetic markers, that are uniquely shared by every member of the phylum.

Despite this uncertainty, some connections remain very strong. The classes Chloroflexi and Thermomicrobia group together consistently in many studies. This grouping is supported by both standard phylogenetic methods and the identification of shared conserved signature indels. Specifically, they share traits in the 50S ribosomal protein L19 and the enzyme UDP-glucose 4-epimerase. Because of these strong links, some scientists suggest that the phylum Chloroflexi "sensu stricto" should only include these two classes.

This scientific debate changes how we view the entire group. It is possible that the other four classes—Dehalococcoidetes, Anaerolineae, Caldilineae, and Ktedonobacteria—belong elsewhere. Some researchers suggest these classes might represent one or more independent phyla. These groups branch out in the neighborhood of the Chloroflexi rather than being part of them. As technology improves, our understanding of these bacterial connections continues to evolve through new genetic data and protein analysis.

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