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Transcription (biology)

life science Maturity 9-11 Next article →

Transcription is a fundamental biological process used to duplicate a DNA segment into an RNA molecule. This process is essential for gene expression, which allows cells to use their genetic instructions. Some transcribed segments become messenger RNA (mRNA), which encodes proteins. Other segments become non-coding RNAs (ncRNAs). Both DNA and RNA are nucleic acids made of nucleotide sequences.

Transcription label en
Transcription label en

In virology, transcription refers to making mRNA from a viral RNA molecule. Many RNA viruses use negative-sense RNA as a template to create positive-sense viral mRNA. This step is necessary for synthesizing the proteins required for viral replication. This specific process is catalyzed by a viral RNA-dependent RNA polymerase.

The mechanism of transcription follows a specific sequence of steps. It begins with initiation, where RNA polymerase and general transcription factors bind to a DNA promoter. This forms an RNA polymerase-promoter closed complex. In this state, the promoter DNA remains fully double-stranded. The enzyme then unwinds about 14 base pairs of DNA. The process moves through promoter escape, elongation, and finally termination.

Simple transcription elongation1
Simple transcription elongation1

During elongation, RNA polymerase reads the antisense strand of DNA from the 3' end to the 5' end. It builds the complementary RNA strand in the 5' to 3' direction. This directionality exists because RNA polymerase can only add nucleotides to the 3' end of the growing chain. This method avoids the need for RNA primers or Okazaki fragments used in DNA replication.

Transcription involves several distinct parts and regulatory sequences. A DNA transcription unit often contains a coding sequence and regulatory sequences. The regulatory sequence located upstream from the coding sequence is the 5' untranslated region (5'UTR). The sequence downstream is the 3' untranslated region (3'UTR). The DNA strand that is not used as a template is called the coding strand. Its sequence matches the new RNA transcript, except that RNA uses uracil (U) instead of thymine (T).

Because transcription has fewer proofreading mechanisms than DNA replication, it has lower copying fidelity.

In mammals, transcription is highly regulated by various cis-regulatory elements. These include core promoters and promoter-proximal elements located near transcription start sites. Other elements, like enhancers, silencers, and insulators, are often located far from the start site. Enhancers play a leading role in initiating transcription. They can increase transcription levels by up to 100-fold.

Regulation of transcription in mammals
Regulation of transcription in mammals

Enhancers often control cell-type-specific programs by looping through long distances of DNA. This looping brings the enhancer into physical proximity with a target gene's promoter. These loops are often stabilized by connector proteins like CTCF or YY1.

Complexes of proteins help coordinate these distant interactions. A large structure called the Mediator complex consists of about 26 proteins. The Mediator communicates signals from transcription factors bound to enhancers directly to RNA polymerase II. There are approximately 1,600 different transcription factors in a human cell. These proteins bind to specific motifs on enhancers to govern transcription levels. Additionally, active enhancers produce two enhancer RNAs (eRNAs) as RNA polymerases act on both DNA strands.

Another layer of control is DNA methylation, which affects about 60% of promoters. This involves adding a methyl group to cytosine, creating 5-methylcytosine (5-mC). This occurs mostly at CpG sites, where a cytosine is followed by a guanine.

Cytosine and 5-methylcytosine
Cytosine and 5-methylcytosine

There are about 28 million CpG dinucleotides in the human genome. In most mammals, 70% to 80% of CpG cytosines are methylated. However, active promoters often contain unmethylated groups called CpG islands. If these islands are methylated, they can silence gene transcription through methyl-binding domain (MBD) proteins.

Specific proteins like EGR1 demonstrate how cells respond to signals. EGR1 is a transcription factor that can regulate the methylation of CpG islands. In neurons, the binding of EGR1 can recruit TET1 enzymes to methylated promoters. These TET enzymes catalyze the demethylation of 5-methylcytosine. This process allows neurons to initiate the transcription of hundreds of genes following activation. This complex system of loops, factors, and chemical marks ensures that genes are expressed at exactly the right time and place.

Human karyotype with bands and sub-bands
Human karyotype with bands and sub-bands
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🖼️ Images & Media (8)
File:Regulation of transcription in mammals.jpg
Regulation of transcription in mammals.jpg
File:Cytosine and 5-methylcytosine.svg
Cytosine and 5-methylcytosine.svg
File:Human karyotype with bands and sub-bands.png
Human karyotype with bands and sub-bands.png
File:Simple transcription elongation1.svg
Simple transcription elongation1.svg
File:RNA role in the transcription and interaction with other transcription factors .png
RNA role in the transcription and...
File:Ctd role .png
Ctd role .png
File:Transcription label en.jpg
Transcription label en.jpg
File:RetroTranscription.jpg
RetroTranscription.jpg
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