Nepedia
Back to Discover
Advanced Reader
🧬

Human genome

life science Maturity 9-11 evolution Next article →

This article covers sensitive topics: evolution. Parents can manage visibility in Parental Controls.

The human genome is the complete set of DNA sequences for an individual. It includes 22 pairs of autosomes and two distinct sex chromosomes, known as X and Y.

Consanguineous Mating resulting in Knockout
Consanguineous Mating resulting in Knockout

Most human cells are diploid, meaning they contain two sets of these chromosomes. This results in approximately 6.2 billion base pairs of DNA. A separate, small DNA molecule is also found within individual mitochondria. Scientists usually categorize these into the nuclear genome and the mitochondrial genome. Understanding the genome is vital for studying how life is built and how it functions.

Gene Knockouts in Outbred vs. Parentally-related populations
Gene Knockouts in Outbred vs. Parentally-related populations

The genome functions through a complex system of coding and non-coding elements. Protein-coding genes are the most widely studied component of the genome. These sequences lead to the production of all human proteins. The human reference genome contains between 19,000 and 20,000 of these genes. Interestingly, these genes contain an average of 10 introns, which are non-coding sections within a gene. The average size of a protein-coding gene is about 62 kb. While these genes take up about 40% of the genome, the actual coding DNA is only 1% to 2%. The remaining 98% to 99% is classified as non-coding DNA.

TSC SNP Distribution
TSC SNP Distribution

Non-coding DNA is far from useless; it performs many essential roles. Noncoding RNA molecules are critical for protein synthesis and RNA processing. These include types like tRNAs, ribosomal RNAs, microRNAs, snRNAs, and long non-coding RNAs (lncRNAs). Many of these molecules are vital for gene regulation and expression. Furthermore, noncoding RNA contributes to epigenetics and the translational machinery. Another major component is regulatory DNA. These sequences act as control switches for gene expression. Some scientists estimate regulatory sequences make up 8% of the genome, while others suggest they may account for 20% or more.

TSC SNP Distribution
TSC SNP Distribution

Another fascinating part of the genome involves repetitive DNA sequences. These sequences make up approximately 50% of the total human genome. About 8% consists of tandem DNA arrays, which are adjacent copies of a sequence. These include microsatellites, which are repeats of fewer than ten nucleotides. Trinucleotide repeats are particularly important because they can occur in coding regions. For example, an expansion of the (CAG)n repeat in the Huntingtin gene causes Huntington's disease. There are also longer arrays called minisatellites. These highly variable sequences are often used in forensic DNA analysis and genealogical testing.

Transposable elements, often called "jumping genes," also shape our genetic makeup. These are DNA sequences that can replicate and insert copies of themselves into new locations. The most abundant lineage is Alu, with about 50,000 active copies in the genome. Another lineage, LINE-1, has about 100 active copies per genome. Together with non-functional relics, these elements account for over half of all human DNA. Some of these are endogenous retroviruses, which are viral DNA sequences permanently integrated into our genome. At least three of these have proven functions, such as HERV-K. Others, like HERV-W and HERV-FRD, help in placenta formation during pregnancy.

History shows the incredible progress made in sequencing these instructions. In 2000, the Human Genome Project reported sequencing 88% of the genome. By 2020, at least 8% was still missing. In 2021, researchers successfully sequenced a complete female genome. The Y chromosome, which consists of 62,460,029 base pairs, was fully sequenced in January 2022. The current standard reference is GRCh38.p14, released in July 2023. This reference contains approximately 3.1 billion base pairs. In 2023, a draft human pangenome reference was published using 47 genomes from diverse ethnicities to better capture human biodiversity.

Comparing humans to other species reveals how the genome evolves. Humans have many pseudogenes, which are inactive, nonfunctional copies of protein-coding genes. There are approximately 13,000 pseudogenes in the human genome. For example, over 60% of the olfactory receptor gene family in humans consists of pseudogenes. This is much higher than the 20% found in mice. This specific genetic trait helps explain why humans have a less acute sense of smell than many other mammals. While humans and chimpanzees are closely related, they differ by about 1.1% in fixed single-nucleotide variants. These genomic details show how evolution leaves a permanent map within our cells.

702 words

Where will your curiosity go next?

Keep exploring at your chosen reading level.

🖼️ Images & Media (3)
File:TSC SNP Distribution.jpg
TSC SNP Distribution.jpg
File:Gene Knockouts in Outbred vs. Parentally-related populations.jpg
Gene Knockouts in Outbred vs....
File:Consanguineous Mating resulting in Knockout.jpg
Consanguineous Mating resulting in Knockout.jpg
More to explore

🔬 Go deeper

More advanced topics to explore

🪜 Step back

Simpler topics to build understanding

What is Nepedia?

A free, ad-free encyclopedia for children. Every article is written at five reading levels, so the same page works for a five-year-old and a fifteen-year-old — use the level switcher above to see this one change. No account needed to read.