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Chlamydiota

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Chlamydiota is a diverse phylum of bacteria that includes many different types of organisms. Some members are pathogens that cause disease in humans and animals. Others are symbionts that live within ubiquitous protozoa. In 2020, scientists discovered many new Chlamydiota living in ocean-floor environments. It is not yet known if all of these deep-sea forms require a host to survive. Most Chlamydiota known to science are obligate intracellular bacteria. This means they must live inside the cells of a host to complete their life cycle.

These bacteria follow a unique biphasic developmental cycle to survive and multiply. When they are outside of a host cell, they exist as elementary bodies. These are infectious, spore-like forms that possess a tough cell wall made of a protein network. Once they enter a host cell, they transform into reticulate bodies. The reticulate body is a metabolically active form that allows the bacteria to grow and replicate. They usually live within an inclusion body or a vacuole inside the host. Because they depend entirely on the host for replication, they cannot be grown in standard bacterial culture media. Scientists must isolate them while they are still inside living host cells.

Research into the cell walls of Chlamydiota has revealed surprising biological details. For a long time, scientists could not find peptidoglycan, a common bacterial material, in their cell walls. However, studies in 2013 showed that Protochlamydia amoebophila has a sacculus, or protective shell, made of peptidoglycan. In 2014, researchers found that the human pathogen Chlamydia trachomatis also contains peptidoglycan during its intracellular stage. Unlike most bacteria, Chlamydiota do not use peptidoglycan to make a full shell around the entire cell. Instead, they produce a thin ring of peptidoglycan down the middle during cell division. A protein called MreB controls this ring production, taking over the role that the FtsZ protein usually performs in other bacteria. This explains why penicillin is bacteriostatic, meaning it stops growth, rather than bacteriocidal, which kills the bacteria.

Human history with these organisms stretches back to ancient times. Manuscripts from ancient China and Egypt describe eye diseases that match Chlamydial symptoms. A modern scientific description was provided by Halberstaedter and von Prowazek in 1907. During a pneumonitis outbreak in the late 1920s and early 1930s, scientists successfully isolated Chlamydial strains using the yolk sacs of embryonating eggs. The name "chlamydia," which means "cloak," first appeared in scientific literature in 1945. In 1956, Tang Fei-fan first cultured Chlamydia trachomatis, though it was not yet recognized as a bacterium. The group was officially recognized as bacteria in 1966, and the genus Chlamydia was validated.

Chlamydiota are significant in public health due to the diseases they cause. Chlamydia trachomatis is a major human pathogen that causes both trachoma and sexually transmitted infections. In the United States, chlamydia is the most common bacterial sexually transmitted infection, with 2.86 million infections reported annually. Another important species is Chlamydia pneumoniae, which causes a type of pneumonia. Chlamydophila psittaci is also a known human pathogen that causes psittacosis. Because of their unique intracellular life cycle, doctors can use DNA analysis to diagnose these infections.

The taxonomy of Chlamydiota is complex and continues to evolve with new genetic data. The phylum is divided into two orders: Chlamydiales and Parachlamydiales. There are nine families within a single class called Chlamydiia. Four of these families are validly named: Chlamydiaceae, Parachlamydiaceae, Simkaniaceae, and Waddliaceae. Other families, such as Clavichlamydiaceae and Rhabdochlamydiaceae, are currently described. Scientists distinguish these groups using molecular signatures like conserved indels (CSIs) and conserved proteins (CSPs). These unique genetic markers help researchers understand the shared ancestry within each order.

Evolutionarily, Chlamydiota are a very ancient group. They separated from other bacterial lineages approximately one billion years ago. This long history is reflected in their unique genetic makeup. Some scientists once believed Chlamydiota shared a common ancestor with cyanobacteria, the group that includes the ancestors of plant chloroplasts. A 2004 study found that 4% to 11% of certain Chlamydiota genes were similar to cyanobacterial and plant genes. However, other evidence suggests they may be more closely related to the Verrucomicrobiota. This makes the evolutionary history of Chlamydiota a major subject of scientific study.

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