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DNA sequencing

life science Maturity 9-11

Everything alive has a tiny code.

Frederick Sanger2.jpg
Frederick Sanger2.jpg
This code is in your body. It tells your body how to grow. We can read this code to help people stay well. It can even help us find old animals.
Genome map of the bacteriophage ΦX174 showing overlapping genes.svg
Genome map of the bacteriophage ΦX174 showing overlapping genes.svg
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54 words

Everything alive has a tiny code.

Frederick Sanger2.jpg
Frederick Sanger2.jpg
This code is made of four parts. We can read the order of these parts. Reading the code helps doctors find sickness. It can also help us find old animals.
Genome map of the bacteriophage ΦX174 showing overlapping genes.svg
Genome map of the bacteriophage ΦX174 showing overlapping genes.svg
Scientists even used it on a mammoth. That animal was very old. This code is found in plants and animals too. It helps us learn how all life is linked. Reading this code is a big help to science.

86 words

All living things have a tiny code called DNA.

Frederick Sanger2.jpg
Frederick Sanger2.jpg
This code tells life how to grow. It is made of four parts called bases. These bases are adenine, thymine, cytosine, and guanine. DNA sequencing is the way we find their order.
Genome map of the bacteriophage ΦX174 showing overlapping genes.svg
Genome map of the bacteriophage ΦX174 showing overlapping genes.svg
Scientists use this to study many things. In medicine, it helps doctors find diseases. They can compare healthy DNA to sick DNA. This helps them pick the best care for a person. In history, it shows how living things are related. Scientists even read DNA from a mammoth. That mammoth lived over a million years ago!
Illumina MiSeq sequencer.jpg
Illumina MiSeq sequencer.jpg
In science, it helps study tiny viruses. It can also help solve crimes. Every person has a unique DNA pattern. This pattern is like a fingerprint. New tools make this work very fast. We can now read the whole code of a human. This helps us learn about all life on Earth.

163 words

DNA sequencing is a way to read the code of life. Every living thing has a special molecule called DNA. This molecule holds instructions for how an organism grows and works. The code is made of four parts called bases. These bases are adenine, thymine, cytosine, and guanine. Scientists use sequencing to find the exact order of these bases.

Genome map of the bacteriophage ΦX174 showing overlapping genes.svg
Genome map of the bacteriophage ΦX174 showing overlapping genes.svg
Knowing this order is very important for many kinds of science. It helps us understand how all life on Earth is connected.

How does this work? To sequence DNA, scientists must find the physical order of the four bases.

Radioactive Fluorescent Seq.jpg
Radioactive Fluorescent Seq.jpg
In some methods, they use special tools to see each base one by one. Some methods use a way to stop the building of DNA strands at certain points. This allows researchers to see where each base sits in the chain. Newer tools can read very long stretches of DNA at once. This makes the work much faster than it used to be.
Mapping Reads.png
Mapping Reads.png
By reading these patterns, we can see the full map of a genome.

People have been studying DNA for a long time. Friedrich Miescher first found and isolated DNA in 1869. For many years, people thought proteins held the blueprints for life instead. That changed after 1944 when researchers showed DNA could change bacteria. In 1953, James Watson and Francis Crick shared a model of the double helix.

Frederick Sanger2.jpg
Frederick Sanger2.jpg
This model showed how the two strands of DNA coil together. Later, Frederick Sanger helped create ways to sequence DNA more quickly. His work helped lead to many of the tools we use today.

There are many amazing facts about what we can find. In February 2021, scientists sequenced DNA from a mammoth. This was the oldest DNA ever sequenced, and it was over a million years old!

DNA Sequencing gDNA libraries.jpg
DNA Sequencing gDNA libraries.jpg
In the world of tiny viruses, there are over 2.3 million unique sequences in GenBank. Scientists also use sequencing to help solve crimes or find relatives. Every person has a unique pattern in their DNA, much like a fingerprint. This makes it possible to identify specific individuals from things like hair or saliva.

Today, sequencing helps us in our daily lives. Doctors use it to find diseases and pick the best treatments for patients.

Illumina MiSeq sequencer.jpg
Illumina MiSeq sequencer.jpg
It can even help us fight germs by finding the right medicines. If a doctor knows which bacteria is making someone sick, they can use a precise antibiotic. This helps stop germs from becoming too strong to fight. We can also use it to study the environment. By looking at water or dirt, we can see which tiny microbes live there.
Illumina HiSeq 2500.jpg
Illumina HiSeq 2500.jpg
This helps us understand the world around us better than ever before.

470 words

DNA sequencing is the scientific process of determining the exact order of nucleotides within a DNA molecule. These nucleotides, often called bases, serve as the fundamental building blocks of the genetic code. There are four canonical bases that make up the structure of DNA: adenine (A), thymine (T), cytosine (C), and guanine (G). By identifying the specific physical sequence of these four letters, researchers can decode the biological instructions that govern living organisms. This technology is essential for modern biology, medicine, and various other scientific fields.

Genome map of the bacteriophage ΦX174 showing overlapping genes.svg
Genome map of the bacteriophage ΦX174 showing overlapping genes.svg

The mechanism of sequencing involves reading the chemical patterns of these bases. In some traditional methods, such as automated chain-termination sequencing, scientists use special molecules to stop the building of DNA strands at specific points. This allows them to see where each base sits in the chain.

Radioactive Fluorescent Seq.jpg
Radioactive Fluorescent Seq.jpg
Other modern methods, known as next-generation sequencing (NGS), use different technologies to read much larger amounts of data at once. These methods can sequence individual genes, large clusters of genes called operons, entire chromosomes, or complete genomes. Sequencing is also an efficient way to indirectly study RNA or proteins by looking at their open reading frames.
Mapping Reads.png
Mapping Reads.png

Scientists use sequencing across many different biological disciplines. In molecular biology, it helps researchers study genomes and the proteins they encode. This allows for the identification of changes in genes or noncoding DNA, which can include regulatory sequences. In evolutionary biology, sequencing helps scientists understand how different organisms are related and how they evolved over time. Metagenomics is another field that uses sequencing to identify organisms present in environments like water, soil, or air. This is vital for studying microbiomes and understanding ecology.

DNA Sequencing gDNA libraries.jpg
DNA Sequencing gDNA libraries.jpg

In the field of virology, sequencing is a primary tool because most viruses are too small to see with a light microscope. Researchers use it to identify viruses and study their genomes, which can be made of either DNA or RNA. RNA viruses are particularly time-sensitive because they degrade quickly in clinical samples. There are currently more than 2.3 million unique viral sequences stored in GenBank. In 2019, next-generation sequencing became more popular than traditional Sanger sequencing for generating viral genomes. Sequencing can even help estimate when a viral outbreak began using a molecular clock technique.

Illumina MiSeq sequencer.jpg
Illumina MiSeq sequencer.jpg

The history of DNA research is a long journey of discovery. Friedrich Miescher first isolated DNA in 1869, but it was not fully understood for many years. Many scientists originally believed that proteins, not DNA, held the genetic blueprint for life. This changed after 1944, when Oswald Avery, Colin MacLeod, and Maclyn McCarty showed that purified DNA could transform bacteria. In 1953, James Watson and Francis Crick proposed the double-helix model of DNA. Their model was based on X-ray structures studied by Rosalind Franklin. This model showed how two strands of nucleotides coil around each other using hydrogen bonds.

Frederick Sanger2.jpg
Frederick Sanger2.jpg

Technological advancements have made sequencing much faster and more accessible. In the early 1970s, researchers used laborious methods based on two-dimensional chromatography. By 1975, Frederick Sanger and Alan Coulson developed a "Plus and Minus" method for sequencing DNA. In 1977, Sanger improved this by using chain-terminating dideoxynucleotides to create a more rapid method. This was a major step forward from the earlier work of Ray Wu, who used primer extension in 1970. Later, Walter Gilbert and Allan Maxam developed a method involving chemical degradation. These historical breakthroughs paved the way for the high-speed automated machines used today.

Illumina HiSeq 2500.jpg
Illumina HiSeq 2500.jpg

Today, DNA sequencing has profound implications for human health and forensic science. In medicine, clinicians use genetic testing to diagnose rare diseases and guide patient treatments. By comparing healthy DNA to mutated sequences, doctors can identify various cancers and manage diseases more effectively. Sequencing can also identify specific bacteria to help doctors choose the most precise antibiotics. This helps reduce the risk of antimicrobial resistance. In forensics, DNA sequencing is used for identification and paternity testing. Because the patterns in hair, saliva, or skin are unique to each organism, they can link a specific individual to a piece of evidence.

History of sequencing technology.jpg
History of sequencing technology.jpg

694 words
🖼️ Images & Media (14)
File:Radioactive Fluorescent Seq.jpg
Radioactive Fluorescent Seq.jpg
File:Frederick Sanger2.jpg
Frederick Sanger2.jpg
File:Genome map of the bacteriophage ΦX174 showing overlapping genes.svg
Genome map of the bacteriophage ΦX174...
File:History of sequencing technology.jpg
History of sequencing technology.jpg
File:DNA Sequencing gDNA libraries.jpg
DNA Sequencing gDNA libraries.jpg
File:Mapping Reads.png
Mapping Reads.png
File:Illumina HiSeq 2500.jpg
Illumina HiSeq 2500.jpg
File:Illumina NovaSeq 6000 flow cell.jpg
Illumina NovaSeq 6000 flow cell.jpg
File:Illumina MiSeq sequencer.jpg
Illumina MiSeq sequencer.jpg
File:MGISEQ-2000RS.jpg
MGISEQ-2000RS.jpg
File:Library preparation for the SOLiD platform.svg
Library preparation for the SOLiD platform.svg
Two-base encoding scheme.pdf

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